Web12 Nov 2024 · A total of 177 PAAD patients with complete RNA sequencing data and available survival information were enrolled in this study. Information on seven types of ASs was acquired from the TCGA SpliceSeq database , and the percent spliced in (PSI) value was applied to quantify them. To ensure the rigor of the study, only ASs with average PSI … Web11 May 2024 · Sequencing data from 412 chemotherapy-naïve bladder cancer (BLCA) tumors of the TCGA were downloaded and analyzed with Ancer for neoepitope identification and triaging. The TGCA's BLCA dataset...
Integrated multi-omics analysis of the clinical relevance and …
Web11 Jun 2024 · Methods: The percent spliced in (PSI) values for AS events in 151 TNBC patients were obtained from The Cancer Genome Atlas (TCGA) SpliceSeq database. Univariate Cox and stepwise Multivariate Cox regression analyses were conducted to find the best prognostic AS model. Web16 Nov 2014 · High-throughput sequencing of short cDNA fragments (RNA-seq) generates a genome-wide snapshot of these post-transcriptional processes. RNA-seq reads yield insights into the regulation of alternative splicing by revealing the usage of known or unknown splice sites as well as the expression level of exons. 占い 2022 誕生日 血液型
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Web14 Jan 2024 · The authors would like to thank the TCGA Spliceseq, TCGA database and SpliceAid 2 database for the availability of the data. Funding sources. This study was funded by Guangxi Medical University Training Program for Distinguished Young Scholars, Medical Excellence Award Funded by the Creative Research Development Grant from the First … WebPercent splice in (PSI) ranged from 0 to 1 was a commonly used ratio to indicate different uses of alternative exon. We downloaded PSI value of 122,423 alternative splicing (AS) events across 10,699 samples in 33 cancer types from the TCGA SpliceSeq database [1]. WebMethods: The splicing profiles of patients with cholangiocarcinoma were obtained from The Cancer Genome Atlas (TCGA) spliceSeq database. The transcriptomics, simple nucleotide variation (SNP) and clinical data of patients with cholangiocarcinoma were obtained from TCGA database. Patients were divided into genomic unstable (GU-like) and genomic ... 占い 2022 銀座の母